STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM42110.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
AFM39173.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
     0.765
AFM42245.1
PFAM: Stage III sporulation protein AF (Spore_III_AF); TIGRFAM: stage III sporulation protein AF.
  
     0.745
AFM42623.1
Hypothetical protein; TIGRFAM: putative membrane fusion protein.
  
     0.706
AFM42104.1
Hypothetical protein.
  
     0.701
AFM43521.1
Hypothetical protein.
  
     0.698
AFM43484.1
Hypothetical protein.
  
     0.694
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.685
AFM43520.1
PFAM: Predicted membrane protein (DUF2232).
  
     0.683
AFM43156.1
PFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD.
  
     0.656
AFM39911.1
Hypothetical protein.
  
     0.651
Your Current Organism:
Desulfosporosinus acidiphilus
NCBI taxonomy Id: 646529
Other names: D. acidiphilus SJ4, Desulfosporosinus acidiphilus DSM 22704, Desulfosporosinus acidiphilus SJ4, Desulfosporosinus acidiphilus str. SJ4, Desulfosporosinus acidiphilus strain SJ4, Desulfosporosinus sp. SJ4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.