STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM43400.1DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: FtsK/SpoIIIE family. (280 aa)    
Predicted Functional Partners:
AFM43398.1
Hypothetical protein.
       0.778
AFM43399.1
Hypothetical protein.
       0.773
AFM43397.1
Hypothetical protein.
       0.613
AFM42634.1
Cell division septal protein; Essential cell division protein.
   
 
 0.578
AFM39680.1
PFAM: Collagen triple helix repeat (20 copies).
   
 
 0.461
AFM39681.1
PFAM: Collagen triple helix repeat (20 copies).
   
 
 0.461
AFM40631.1
PFAM: Collagen triple helix repeat (20 copies).
   
 
 0.461
ispH
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
  
 0.461
AFM41803.1
Hypothetical protein.
   
 
 0.461
AFM40466.1
Protein of unknown function DUF87.
 
  
 0.452
Your Current Organism:
Desulfosporosinus acidiphilus
NCBI taxonomy Id: 646529
Other names: D. acidiphilus SJ4, Desulfosporosinus acidiphilus DSM 22704, Desulfosporosinus acidiphilus SJ4, Desulfosporosinus acidiphilus str. SJ4, Desulfosporosinus acidiphilus strain SJ4, Desulfosporosinus sp. SJ4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.