STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER84808.1GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex. (285 aa)    
Predicted Functional Partners:
SER84871.1
Acetamidase/formamidase.
       0.787
SER84760.1
Polar amino acid transport system permease protein.
       0.773
SER84782.1
Polar amino acid transport system ATP-binding protein.
       0.773
SER77430.1
DNA-binding transcriptional regulator, FadR family.
  
     0.720
SER84703.1
Polar amino acid transport system substrate-binding protein.
       0.718
SER84523.1
DNA-binding transcriptional regulator, GntR family.
  
  
0.483
SES03071.1
DNA-binding transcriptional regulator, IclR family.
  
    0.440
SER95852.1
DNA-binding transcriptional regulator, IclR family.
  
    0.415
SER96439.1
GntR family transcriptional regulator.
  
    0.415
SER89132.1
Lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.403
Your Current Organism:
Propionibacterium cyclohexanicum
NCBI taxonomy Id: 64702
Other names: ATCC 700429, CCUG 48885, CIP 105414, DSM 16859, IAM 14535, JCM 21245, NBRC 103082, NRIC 0247, P. cyclohexanicum, Propionicibacterium cyclohexanicum, strain TA-12
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