STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER96758.1Helix-turn-helix domain-containing protein. (332 aa)    
Predicted Functional Partners:
SER84199.1
PAS fold-containing protein.
  
 0.999
SER59775.1
enoyl-CoA hydratase.
   
 0.948
SER47383.1
Ribose transport system substrate-binding protein.
    
 0.921
SER91541.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.910
SER55250.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.900
SER59619.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 0.900
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.878
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
 0.873
SER54802.1
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
 
 0.871
SER48531.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.848
Your Current Organism:
Propionibacterium cyclohexanicum
NCBI taxonomy Id: 64702
Other names: ATCC 700429, CCUG 48885, CIP 105414, DSM 16859, IAM 14535, JCM 21245, NBRC 103082, NRIC 0247, P. cyclohexanicum, Propionicibacterium cyclohexanicum, strain TA-12
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