STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH07454.1KEGG: mae:Maeo_0312 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB. (453 aa)    
Predicted Functional Partners:
AEH06546.1
SMART: DNA-directed DNA polymerase, family B; manually curated; KEGG: mae:Maeo_0653 DNA polymerase Pol2; TIGRFAM: DNA-directed DNA polymerase, family B, pol2; PFAM: DNA-directed DNA polymerase, family B, conserved region; DNA-directed DNA polymerase, family B, exonuclease domain.
  
    0.735
AEH07455.1
SMART: Nucleotide binding protein, PINc; KEGG: mae:Maeo_0313 hypothetical protein.
  
    0.704
AEH07453.1
KEGG: mae:Maeo_0986 adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.522
AEH06092.1
PFAM: Uncharacterised conserved protein UCP006577; KEGG: mae:Maeo_0880 hypothetical protein.
  
     0.483
AEH06914.1
PFAM: Protein of unknown function DUF54; KEGG: mmp:MMP0300 hypothetical protein.
  
     0.458
AEH06931.1
Methanogenesis marker protein 10; KEGG: mae:Maeo_1262 hypothetical protein; TIGRFAM: Putative methanogenesis marker protein 10; PFAM: Protein of unknown function DUF512; Radical SAM.
  
     0.450
AEH06069.1
KEGG: mae:Maeo_0512 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
 
     0.438
mtrC
Tetrahydromethanopterin S-methyltransferase subunit C; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.
  
     0.432
mtrD
Tetrahydromethanopterin S-methyltransferase subunit D; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.
  
     0.430
mtrG
Tetrahydromethanopterin S-methyltransferase subunit G; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.
  
     0.426
Your Current Organism:
Methanothermococcus okinawensis
NCBI taxonomy Id: 647113
Other names: M. okinawensis IH1, Methanothermococcus okinawensis DSM 14208, Methanothermococcus okinawensis IH1, Methanothermococcus okinawensis str. IH1, Methanothermococcus okinawensis strain IH1
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