STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHP86829.1KEGG: mfs:MFS40622_0580 CRISPR-associated protein, Csm1 family; TIGRFAM: CRISPR-associated protein, Csm1 family; PFAM: metal-dependent phosphohydrolase HD sub domain. (894 aa)    
Predicted Functional Partners:
EHP86824.1
KEGG: hypothetical protein; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324.
 
 
 0.999
EHP86825.1
KEGG: mfs:MFS40622_0583 CRISPR-associated RAMP protein, Csm4 family; TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; PFAM: protein of unknown function DUF324.
 
 
 0.999
EHP86827.1
KEGG: hypothetical protein; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324.
 
 
 0.999
EHP86828.1
KEGG: hypothetical protein; TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: CRISPR-associated protein TM1810 domain protein.
 
 
 0.999
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.848
EHP84225.1
KEGG: mfs:MFS40622_0585 CRISPR-associated protein, MJ1666 family; TIGRFAM: CRISPR-associated protein, MJ1666 family; CRISPR-associated protein DxTHG motif; PFAM: CRISPR-associated protein DxTHG.
     
 0.711
EHP88829.1
CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.
 
   
 0.689
EHP87770.1
KEGG: mfs:MFS40622_1166 CRISPR-associated protein Cas6; TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57.
 
   
 0.683
EHP88826.1
TIGRFAM: CRISPR-associated regulatory protein, DevR family; CRISPR-associated autoregulator DevR family; KEGG: mfs:MFS40622_1168 CRISPR-associated regulatory protein, DevR family.
 
  
 0.664
EHP84224.1
KEGG: pho:PH0177 hypothetical protein.
       0.641
Your Current Organism:
Methanotorris formicicus
NCBI taxonomy Id: 647171
Other names: M. formicicus Mc-S-70, Methanotorris formicicus ATCC BAA-687, Methanotorris formicicus DSM 16983, Methanotorris formicicus Mc-S-70, Methanotorris formicicus stain Mc-S-70, Methanotorris formicicus str. Mc-S-70, Methanotorris sp. Mc-S-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.