STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHP86256.1PFAM: SufBD protein; KEGG: mfe:Mefer_1236 SufBD protein. (313 aa)    
Predicted Functional Partners:
EHP86255.1
KEGG: mfe:Mefer_1235 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.999
rps15
PFAM: Ribosomal S13S15 domain protein; ribosomal protein S15; KEGG: mfe:Mefer_1234 30S ribosomal protein S15P.
  
    0.673
EHP88340.1
PFAM: protein of unknown function DUF59; KEGG: mmp:MMP1615 hypothetical protein.
     
 0.581
EHP83980.1
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.572
infB
Translation initiation factor aIF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
     
 0.562
EHP86689.1
PFAM: protein of unknown function DUF74; KEGG: ctt:CtCNB1_2775 hypothetical protein; Belongs to the UPF0145 family.
  
  
 0.543
EHP86254.1
PFAM: GTPase of unknown function domain protein; GTP-binding protein HSR1-related; TGS domain-containing protein; KEGG: mfs:MFS40622_0710 GTPase of unknown function domain protein.
     
 0.543
pyrD
Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate.
     
 0.527
EHP87588.1
Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
     
 0.490
EHP83938.1
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: mfs:MFS40622_1558 dinitrogenase iron-molybdenum cofactor biosynthesis protein.
 
  
 0.437
Your Current Organism:
Methanotorris formicicus
NCBI taxonomy Id: 647171
Other names: M. formicicus Mc-S-70, Methanotorris formicicus ATCC BAA-687, Methanotorris formicicus DSM 16983, Methanotorris formicicus Mc-S-70, Methanotorris formicicus stain Mc-S-70, Methanotorris formicicus str. Mc-S-70, Methanotorris sp. Mc-S-70
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