STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHP85883.1PFAM: protein of unknown function DUF128; Ribonuclease R winged-helix domain protein; KEGG: mfs:MFS40622_0114 protein of unknown function DUF128. (540 aa)    
Predicted Functional Partners:
EHP89149.1
TIGRFAM: glutamine synthetase, type I; KEGG: glutamine synthetase (GlnA); PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp.
     
 0.974
pdxT
SNO glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
      
 0.807
EHP89559.1
KEGG: nitrogenase reductase-like protein; PFAM: NifH/frxC-family protein; overlaps another CDS with the same product name.
      
 0.658
EHP89560.1
KEGG: nitrogenase reductase-like protein; PFAM: NifH/frxC-family protein; overlaps another CDS with the same product name.
      
 0.658
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
      
 0.658
EHP85627.1
TIGRFAM: pyridoxal phosphate enzyme; KEGG: mfs:MFS40622_0115 pyridoxal phosphate enzyme.
 
     0.647
mtrC
Tetrahydromethanopterin S-methyltransferase, subunit C; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.
  
     0.619
EHP89077.1
PFAM: Uncharacterised conserved protein UCP006598; KEGG: mfs:MFS40622_0439 hypothetical protein.
  
     0.615
EHP89694.1
TIGRFAM: methanogenesis marker protein 9; KEGG: hypothetical protein.
  
     0.611
gatB
glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
       0.603
Your Current Organism:
Methanotorris formicicus
NCBI taxonomy Id: 647171
Other names: M. formicicus Mc-S-70, Methanotorris formicicus ATCC BAA-687, Methanotorris formicicus DSM 16983, Methanotorris formicicus Mc-S-70, Methanotorris formicicus stain Mc-S-70, Methanotorris formicicus str. Mc-S-70, Methanotorris sp. Mc-S-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.