STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHP85700.1KEGG: queuine tRNA-ribosyltransferase; PFAM: PUA domain containing protein; SMART: PUA domain containing protein. (563 aa)    
Predicted Functional Partners:
EHP85701.1
KEGG: mfe:Mefer_0632 hypothetical protein.
  
    0.960
tgtA
Archaeosine tRNA-ribosyltransferase; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
 
 
0.934
EHP85258.1
KEGG: hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
     0.839
EHP85702.1
KEGG: hypothetical protein; TIGRFAM: methanogenesis marker protein 11; PFAM: domain of unknown function DUF1743.
 
     0.771
EHP84990.1
PFAM: NMD3 family protein; KEGG: mfs:MFS40622_0909 NMD3 family protein.
  
     0.710
rpl40e
KEGG: mfs:MFS40622_1468 hypothetical protein; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.706
EHP84887.1
PFAM: protein of unknown function UPF0179; KEGG: mfs:MFS40622_0648 protein of unknown function UPF0179; Belongs to the UPF0179 family.
  
     0.694
EHP82876.1
PFAM: TatD-related deoxyribonuclease; KEGG: mfe:Mefer_0293 TatD-related deoxyribonuclease.
  
     0.694
EHP85699.1
KEGG: hypothetical protein.
       0.693
EHP83614.1
KEGG: mmz:MmarC7_1694 hypothetical protein.
  
     0.660
Your Current Organism:
Methanotorris formicicus
NCBI taxonomy Id: 647171
Other names: M. formicicus Mc-S-70, Methanotorris formicicus ATCC BAA-687, Methanotorris formicicus DSM 16983, Methanotorris formicicus Mc-S-70, Methanotorris formicicus stain Mc-S-70, Methanotorris formicicus str. Mc-S-70, Methanotorris sp. Mc-S-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.