STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmkTIGRFAM: cytidylate kinase; KEGG: cytidylate kinase. (177 aa)    
Predicted Functional Partners:
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
    
 0.999
EHP87081.1
PFAM: PfkB domain protein; KEGG: mfe:Mefer_1313 PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
 
 
  0.999
rpl34e
PFAM: Ribosomal protein L34e; KEGG: mif:Metin_0110 ribosomal protein L34e; Belongs to the eukaryotic ribosomal protein eL34 family.
  
    0.999
rpl14e
KEGG: mfe:Mefer_0949 50S ribosomal protein L14e; Belongs to the eukaryotic ribosomal protein eL14 family.
  
    0.998
rpl4
50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel.
  
    0.987
rpl22
Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
  
    0.987
rpl14
50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
    0.987
rpl24
Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.
  
    0.987
rps4e
KEGG: 30S ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; Belongs to the eukaryotic ribosomal protein eS4 family.
  
    0.985
nusA
NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.
 
    0.984
Your Current Organism:
Methanotorris formicicus
NCBI taxonomy Id: 647171
Other names: M. formicicus Mc-S-70, Methanotorris formicicus ATCC BAA-687, Methanotorris formicicus DSM 16983, Methanotorris formicicus Mc-S-70, Methanotorris formicicus stain Mc-S-70, Methanotorris formicicus str. Mc-S-70, Methanotorris sp. Mc-S-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.