STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC60_03503Zinc finger CCCH domain-containing protein 3. (643 aa)    
Predicted Functional Partners:
ALC60_06196
RNA-binding protein with serine-rich domain 1.
    
 
 0.873
ALC60_05699
RNA-binding protein 26.
    
 
 0.726
ALC60_13185
YTH domain family protein 2.
    
 
 0.655
ALC60_11312
Putative helicase C6F12.16c.
    
 
 0.525
ALC60_09901
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
    
 
 0.464
ALC60_04309
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]
    
 
 0.462
ALC60_13134
Nuclear cap-binding protein subunit 1.
    
 
 0.461
ALC60_05950
Serrate RNA effector molecule like protein.
    
 
 0.440
ALC60_06224
Nuclear RNA export factor 1.
    
 
 0.427
ALC60_06550
Nuclear RNA export factor 1.
    
   0.416
Your Current Organism:
Trachymyrmex zeteki
NCBI taxonomy Id: 64791
Other names: T. zeteki
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