STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0014PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator, LysR family. (309 aa)    
Predicted Functional Partners:
cbbL
Ribulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
   
 0.813
Rvan_0012
Phosphoribulokinase; KEGG: rpt:Rpal_5125 phosphoribulokinase.
 
   
 0.794
Rvan_0009
KEGG: ribulose-bisphosphate carboxylase; PFAM: ribulose bisphosphate carboxylase small chain.
 
   
 0.772
Rvan_1598
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hch:HCH_06316 transcriptional regulator.
  
     0.652
fbp
PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: inositol phosphatase/fructose-16-bisphosphatase; Belongs to the FBPase class 1 family.
 
   
 0.624
Rvan_0015
Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain-containing protein; helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; KEGG: mpo:Mpop_4835 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain.
     
 0.582
Rvan_1644
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
  
  
 0.571
Rvan_2104
KEGG: cyb:CYB_0748 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.
  
   
 0.467
Rvan_0794
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpd:RPD_4197 LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.461
Rvan_0008
TIGRFAM: CbbX protein; PFAM: AAA ATPase central domain protein; KEGG: rsp:RSP_1280 CbbX protein; SMART: AAA ATPase.
 
   
 0.460
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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