Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0017KEGG: avi:Avi_2926 transcriptional regulator ArsR family; PFAM: Methyltransferase type 11; regulatory protein ArsR; SMART: regulatory protein ArsR. (327 aa)    
Predicted Functional Partners:
Rvan_0018
TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: mno:Mnod_4919 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
 
  
 0.851
Rvan_0019
PFAM: homocysteine S-methyltransferase; KEGG: pag:PLES_34821 B12-dependent methionine synthase.
     
 0.802
Rvan_0016
PFAM: aminotransferase class I and II; KEGG: mrd:Mrad2831_1476 L-threonine-O-3-phosphate decarboxylase.
       0.497
Rvan_0015
Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain-containing protein; helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; KEGG: mpo:Mpop_4835 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain.
 
     0.447
Rvan_0020
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: azl:AZL_012800 hypothetical protein.
       0.447
Rvan_0021
PFAM: protein of unknown function DUF403; KEGG: rce:RC1_1363 hypothetical protein.
       0.447
Rvan_0132
PFAM: ROSMUCR transcriptional regulator; KEGG: msl:Msil_1673 transcriptional regulator, MucR family.
  
   
 0.408
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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