Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Rvan_0021PFAM: protein of unknown function DUF403; KEGG: rce:RC1_1363 hypothetical protein. (344 aa)    
Predicted Functional Partners:
Rvan_0020
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: azl:AZL_012800 hypothetical protein.
    0.990
Rvan_1571
Transglutaminase domain protein; KEGG: pap:PSPA7_5652 hypothetical protein; PFAM: transglutaminase domain protein; transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
  
 0.986
Rvan_1572
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; protein of unknown function DUF403; KEGG: psl:Psta_2848 protein of unknown function DUF404.
 
    0.918
Rvan_1139
Protein of unknown function DUF2126; KEGG: rpe:RPE_0086 transglutaminase domain-containing protein; PFAM: Protein of unknown function DUF2126; transglutaminase domain protein; transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
 
  
 0.811
Rvan_2297
KEGG: azl:AZL_001170 hypothetical protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
 
  
 0.774
Rvan_0724
PFAM: protein of unknown function UCP012641; KEGG: azl:AZL_c00190 hypothetical protein.
 
     0.493
Rvan_0019
PFAM: homocysteine S-methyltransferase; KEGG: pag:PLES_34821 B12-dependent methionine synthase.
       0.453
Rvan_0017
KEGG: avi:Avi_2926 transcriptional regulator ArsR family; PFAM: Methyltransferase type 11; regulatory protein ArsR; SMART: regulatory protein ArsR.
       0.447
Rvan_0018
TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: mno:Mnod_4919 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
       0.447
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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