STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0045TIGRFAM: acetyl-CoA acetyltransferase; KEGG: mag:amb2595 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family. (399 aa)    
Predicted Functional Partners:
Rvan_2899
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: rce:RC1_0547 peroxisomal bifunctional enzyme.
 0.996
Rvan_0558
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: rce:RC1_1743 fatty acid oxidation complex alpha subunit.
 
 0.995
Rvan_0849
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: dar:Daro_1547 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.995
Rvan_0044
KEGG: hoh:Hoch_6534 benzoate-CoA ligase family; TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase.
  
  
 0.844
Rvan_3502
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: mes:Meso_3035 3-hydroxybutyryl-CoA dehydrogenase.
 
 0.809
Rvan_0704
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: azl:AZL_d04160 glutaryl-CoA dehydrogenase.
  
 0.732
Rvan_0848
PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain-containing protein; KEGG: nhl:Nhal_2075 protein of unknown function DUF1974.
  
 0.732
Rvan_1848
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pla:Plav_0821 acyl-CoA dehydrogenase domain-containing protein.
  
 0.732
Rvan_0036
KEGG: gme:Gmet_2150 enoyl-CoA hydratase/isomerase; TIGRFAM: cyclohexa-1,5-dienecarbonyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase.
  
 0.643
Rvan_1977
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bmr:BMI_I415 enoyl-CoA hydratase.
  
 0.643
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.