STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0048KEGG: rpc:RPC_1950 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Rvan_0050
PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: rpe:RPE_1971 ABC-type Co2+ transport system, periplasmic component.
 
  
  0.991
Rvan_0049
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: rpc:RPC_1951 cobalt transport protein CbiM.
    0.982
Rvan_0047
KEGG: rpe:RPE_1968 cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein.
 
     0.953
Rvan_0046
ABC transporter related protein; KEGG: mag:amb4338 ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.890
Rvan_1260
KEGG: ret:RHE_PE00131 serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap.
    
 0.858
Rvan_0051
Transcriptional regulator NikR, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
 
     0.604
Rvan_0343
Nuclear protein SET; KEGG: mlo:mlr3116 hypothetical protein; PFAM: nuclear protein SET; SMART: nuclear protein SET.
   
 0.536
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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