STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0088PFAM: Ferritin Dps family protein; KEGG: rpt:Rpal_3094 ferritin Dps family protein; Belongs to the Dps family. (160 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.824
Rvan_1147
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: bmr:BMI_II702 alkyl hydroperoxide reductase C.
  
  
 0.634
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.588
Rvan_3044
KEGG: hba:Hbal_1359 putative serine protein kinase, PrkA; PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein.
   
    0.529
Rvan_0089
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sun:SUN_0830 hypothetical protein.
       0.487
Rvan_2963
Helix-turn-helix domain protein; KEGG: rce:RC1_2258 DNA-binding protein, putative; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
   
    0.472
Rvan_0087
PFAM: NUDIX hydrolase; KEGG: bbt:BBta_2258 putative NUDIX hydrolase; Belongs to the Nudix hydrolase family.
       0.451
Rvan_0302
PFAM: BolA family protein; KEGG: ptr:457263 bolA homolog 1 (E. coli); Belongs to the BolA/IbaG family.
   
    0.432
Rvan_0312
PFAM: BolA family protein; KEGG: azl:AZL_006630 BolA protein; Belongs to the BolA/IbaG family.
   
    0.432
Rvan_1652
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
  
 0.432
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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