STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0107Signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; KEGG: mlo:mlr9681 sensory transduction histidine kinase; SMART: ATP-binding region ATPase domain protein. (355 aa)    
Predicted Functional Partners:
Rvan_2507
KEGG: mlo:mlr3700 two-component response regulator; PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver.
 
 
 0.913
Rvan_0143
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: met:M446_1809 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver.
 
 
 0.833
Rvan_3673
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: bra:BRADO1833 hypothetical protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
 
 
 0.809
Rvan_1698
Response regulator receiver and unknown domain protein; KEGG: avi:Avi_6000 two-component response regulator; PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver.
 
   
 0.807
Rvan_3025
KEGG: multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
  
 
 0.800
Rvan_1686
TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; GAF domain protein; response regulator receiver; KEGG: bra:BRADO6873 two-component sensor histidine kinase; SMART: GAF domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver.
 
 
 0.785
Rvan_0723
KEGG: mrd:Mrad2831_2937 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
 
 0.756
Rvan_2300
SMART: response regulator receiver; KEGG: ccs:CCNA_03154 PAS-family sensor histidine kinase/receiver protein.
 
 
 0.751
Rvan_1512
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: rpe:RPE_3627 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver.
 
 
 
 0.707
Rvan_2510
KEGG: rpc:RPC_2870 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
   
 0.646
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.