Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0108PFAM: glycoside hydrolase family 31; KEGG: mmw:Mmwyl1_2781 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 31 family. (799 aa)    
Predicted Functional Partners:
Rvan_2702
PFAM: glycoside hydrolase family 3 domain protein; KEGG: rru:Rru_A3299 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 3 family.
 
  
 0.964
Rvan_0542
PFAM: ROK family protein; KEGG: rce:RC1_0837 ROK family protein.
  
 
 0.925
Rvan_2699
KEGG: vap:Vapar_5525 glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related.
  
 
 0.925
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.730
mraZ
PFAM: MraZ domain; KEGG: azc:AZC_4547 MraZ protein; Belongs to the MraZ family.
 
     0.717
Rvan_1149
KEGG: periplasmic protein thiol/disulfide oxidoreductase DsbE; TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein.
    
 
 0.711
Rvan_2411
PFAM: Redoxin domain protein; KEGG: azl:AZL_d01150 thiol:disulfide interchange protein.
    
 
 0.711
Rvan_1154
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
   0.706
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.636
Rvan_1133
TIGRFAM: glycogen debranching enzyme GlgX; 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: glycogen debranching enzyme GlgX; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
     
 0.569
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.