Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0119PFAM: TOBE domain-containing protein; KEGG: rsk:RSKD131_4477 molybdenum-pterin binding protein. (68 aa)    
Predicted Functional Partners:
Rvan_3481
KEGG: bid:Bind_2034 ModE family transcriptional regulator; TIGRFAM: molybdate transport repressor, ModE; PFAM: TOBE domain-containing protein; regulatory protein LysR.
 
 
   0.762
Rvan_0496
PFAM: periplasmic binding protein; KEGG: avn:Avin_00450 ABC transporter, periplasmic binding protein.
 
     0.610
Rvan_0492
PFAM: periplasmic binding protein; KEGG: avn:Avin_00450 ABC transporter, periplasmic binding protein.
 
     0.530
Rvan_0117
KEGG: atc:AGR_C_4642 molybdate-binding periplasmic protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1.
 
   
 0.496
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
       0.448
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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