STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0132PFAM: ROSMUCR transcriptional regulator; KEGG: msl:Msil_1673 transcriptional regulator, MucR family. (137 aa)    
Predicted Functional Partners:
Rvan_1647
PFAM: Protein of unknown function DUF2312; KEGG: met:M446_5200 hypothetical protein; Belongs to the UPF0335 family.
  
     0.660
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.631
Rvan_2172
PFAM: DNA polymerase III chi subunit HolC; KEGG: DNA polymerase III chi subunit HolC.
  
     0.615
Rvan_0220
KEGG: azl:AZL_027200 double-strand break repair protein.
  
     0.598
Rvan_0131
PFAM: protein of unknown function DUF1457; KEGG: pla:Plav_0872 hypothetical protein.
 
     0.555
Rvan_3387
PFAM: protein of unknown function DUF218; KEGG: rpb:RPB_0836 hypothetical protein.
  
     0.548
Rvan_2226
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.547
Rvan_1854
PFAM: protein of unknown function DUF1790; KEGG: met:M446_0854 hypothetical protein.
  
     0.521
Rvan_0301
KEGG: mes:Meso_3068 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
  
     0.517
Rvan_1590
PFAM: protein of unknown function DUF710; KEGG: nha:Nham_3529 hypothetical protein.
  
     0.512
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.