STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0137PFAM: alpha/beta hydrolase fold; KEGG: pag:PLES_21141 putative lipase. (336 aa)    
Predicted Functional Partners:
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.726
Rvan_0536
Magnesium chelatase accessory protein; KEGG: bra:BRADO1609 putative alpha/beta hydrolase, putative protoporphyrin IX magnesium chelatase BchO-like; TIGRFAM: magnesium chelatase accessory protein; PFAM: alpha/beta hydrolase fold.
  
   
 0.706
Rvan_1031
PFAM: alpha/beta hydrolase fold; KEGG: met:M446_6949 alpha/beta hydrolase fold.
  
   
 0.617
Rvan_3070
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rfr:Rfer_2817 acyl-CoA dehydrogenase-like.
  
  0.558
Rvan_0793
PFAM: alpha/beta hydrolase fold; KEGG: rpe:RPE_0830 alpha/beta hydrolase fold.
  
   
 0.539
Rvan_0765
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cag:Cagg_0860 short-chain dehydrogenase/reductase SDR.
 
    0.537
Rvan_0553
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl01_3946 short-chain dehydrogenase/reductase SDR.
  
   0.535
murJ
Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.517
Rvan_2494
PFAM: TROVE domain-containing protein; KEGG: mrd:Mrad2831_1806 TROVE domain-containing protein.
  
     0.492
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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