STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0140PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: bja:blr4438 hypothetical protein. (1780 aa)    
Predicted Functional Partners:
Rvan_0141
TIGRFAM: penicillin-binding protein 1C; KEGG: mex:Mext_1396 penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein.
   
 0.926
Rvan_1260
KEGG: ret:RHE_PE00131 serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap.
    
 0.858
Rvan_0343
Nuclear protein SET; KEGG: mlo:mlr3116 hypothetical protein; PFAM: nuclear protein SET; SMART: nuclear protein SET.
  
 0.593
Rvan_0139
Hypothetical protein; KEGG: ava:Ava_1683 OpcA.
       0.466
Rvan_2488
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: ara:Arad_0300 penicillin-insensitive murein endopeptidase.
  
     0.402
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.