STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0150Phytoene synthase; KEGG: xau:Xaut_3578 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase. (324 aa)    
Predicted Functional Partners:
Rvan_0155
KEGG: msl:Msil_2029 phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: amine oxidase.
 
 0.994
Rvan_0149
KEGG: psa:PST_3874 lycopene cyclase; TIGRFAM: lycopene cyclase; lycopene cyclase family protein; PFAM: Lycopene beta and epsilon cyclase.
 
  
 0.954
Rvan_0207
KEGG: mex:Mext_2726 phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: amine oxidase.
  
 0.915
Rvan_1004
KEGG: rce:RC1_2080 geranylgeranyl reductase BchP; TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase.
 
 
 0.915
Rvan_0688
PFAM: Squalene/phytoene synthase; KEGG: mrd:Mrad2831_2279 squalene/phytoene synthase.
    
  0.905
Rvan_0145
PFAM: Polyprenyl synthetase; KEGG: xau:Xaut_0205 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.898
Rvan_0153
PFAM: Polyprenyl synthetase; KEGG: cak:Caul_1707 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.898
Rvan_2292
PFAM: Polyprenyl synthetase; KEGG: bid:Bind_0855 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.898
Rvan_0152
PFAM: fatty acid hydroxylase; KEGG: psa:PST_3871 beta-carotene hydroxylase.
 
 
 0.839
Rvan_1999
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.819
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.