STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0152PFAM: fatty acid hydroxylase; KEGG: psa:PST_3871 beta-carotene hydroxylase. (180 aa)    
Predicted Functional Partners:
Rvan_0149
KEGG: psa:PST_3874 lycopene cyclase; TIGRFAM: lycopene cyclase; lycopene cyclase family protein; PFAM: Lycopene beta and epsilon cyclase.
 
  
 0.981
Rvan_0155
KEGG: msl:Msil_2029 phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: amine oxidase.
 
   
 0.852
Rvan_0150
Phytoene synthase; KEGG: xau:Xaut_3578 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase.
 
 
 0.839
Rvan_0153
PFAM: Polyprenyl synthetase; KEGG: cak:Caul_1707 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 0.766
Rvan_0207
KEGG: mex:Mext_2726 phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: amine oxidase.
 
   
 0.721
Rvan_3017
TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; KEGG: bph:Bphy_4137 squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
   
 
 0.592
Rvan_3685
TIGRFAM: conserved hypothetical protein; KEGG: hypothetical protein.
   
 
 0.592
Rvan_2903
PFAM: NUDIX hydrolase; KEGG: ana:all7351 hypothetical protein.
  
  
 0.576
Rvan_3019
TIGRFAM: squalene synthase HpnD; KEGG: msl:Msil_3241 squalene synthase HpnD; PFAM: Squalene/phytoene synthase.
 
 
 0.563
Rvan_0627
KEGG: oca:OCAR_4056 nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein).
   
    0.480
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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