Rvan_0169 protein (Rhodomicrobium vannielii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Rvan_0169

KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3. (293 aa)

Predicted Functional Partners:

Rvan_2712

0.885

Rvan_2710

0.869

Rvan_2711

0.861

Rvan_2181

0.855

Rvan_3208

0.852

Rvan_2182

0.817

Rvan_2608

0.798

Rvan_3209

0.769

Rvan_0170

0.562

Rvan_0168

0.505

Your Current Organism:

Rhodomicrobium vannielii

NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Rvan_0168	Rvan_0169	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rle:pRL90175 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	0.505
Rvan_0169	Rvan_0168	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rle:pRL90175 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.505
Rvan_0169	Rvan_0170	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	PFAM: glycosyl transferase family 2; KEGG: pla:Plav_0424 glycosyl transferase family protein.	0.562
Rvan_0169	Rvan_2181	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	KEGG: polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.855
Rvan_0169	Rvan_2182	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	KEGG: polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.817
Rvan_0169	Rvan_2608	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	ABC transporter related protein; KEGG: vvu:VV1_2101 ABC-type histidine transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.	0.798
Rvan_0169	Rvan_2710	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	KEGG: rru:Rru_A2088 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.869
Rvan_0169	Rvan_2711	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	KEGG: met:M446_4545 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.861
Rvan_0169	Rvan_2712	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	KEGG: bra:BRADO6145 glutamate/aspartate ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.	0.885
Rvan_0169	Rvan_3208	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	KEGG: pla:Plav_2986 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.852
Rvan_0169	Rvan_3209	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	KEGG: pla:Plav_2985 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.769
Rvan_0170	Rvan_0169	PFAM: glycosyl transferase family 2; KEGG: pla:Plav_0424 glycosyl transferase family protein.	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	0.562
Rvan_2181	Rvan_0169	KEGG: polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	0.855
Rvan_2181	Rvan_2182	KEGG: polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.943
Rvan_2181	Rvan_2608	KEGG: polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	ABC transporter related protein; KEGG: vvu:VV1_2101 ABC-type histidine transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.	0.938
Rvan_2181	Rvan_2710	KEGG: polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: rru:Rru_A2088 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.585
Rvan_2181	Rvan_2711	KEGG: polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: met:M446_4545 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.543
Rvan_2181	Rvan_2712	KEGG: polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: bra:BRADO6145 glutamate/aspartate ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.	0.835
Rvan_2181	Rvan_3208	KEGG: polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: pla:Plav_2986 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.560
Rvan_2181	Rvan_3209	KEGG: polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: pla:Plav_2985 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.535

page 1 of 4

Server load: medium (76%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About