Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0170PFAM: glycosyl transferase family 2; KEGG: pla:Plav_0424 glycosyl transferase family protein. (643 aa)    
Predicted Functional Partners:
Rvan_2660
Manually curated; KEGG: xau:Xaut_1836 cobyrinic acid ac-diamide synthase.
  
 
 0.853
Rvan_3323
KEGG: rsq:Rsph17025_3714 hypothetical protein.
 
  
 0.742
Rvan_3315
KEGG: xau:Xaut_3704 hypothetical protein.
  
    0.607
Rvan_0273
KEGG: rpb:RPB_0700 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; Belongs to the UPF0758 family.
  
    0.587
Rvan_0169
KEGG: rpt:Rpal_5167 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
       0.558
Rvan_0308
KEGG: putative transmembrane signal peptide protein.
  
     0.555
Rvan_2537
KEGG: mlo:mll2905 flagellar motor protein MotA.
  
  
 0.547
Rvan_3228
KEGG: pla:Plav_3179 ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
  
    0.547
Rvan_2435
KEGG: rpe:RPE_3377 DNA processing protein DprA, putative; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein.
  
    0.523
Rvan_0171
KEGG: xau:Xaut_4854 hypothetical protein.
       0.495
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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