STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0185PFAM: NAD-dependent epimerase/dehydratase; KEGG: tmz:Tmz1t_3455 NAD-dependent epimerase/dehydratase. (324 aa)    
Predicted Functional Partners:
Rvan_2278
TIGRFAM: nucleotide sugar dehydrogenase; KEGG: mmr:Mmar10_2489 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
 0.969
Rvan_0401
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mlo:mlr7549 nucleotide sugar epimerase.
  
  
 
0.902
Rvan_3668
PFAM: NAD-dependent epimerase/dehydratase; KEGG: hya:HY04AAS1_1611 NAD-dependent epimerase/dehydratase.
     
 
0.900
Rvan_0843
Glucose-1-phosphate cytidylyltransferase; KEGG: bov:BOV_A0382 nucleotidyltransferase family protein.
  
 0.895
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.832
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
  0.831
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.827
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.826
Rvan_0835
PFAM: glycosyl transferase group 1; KEGG: mmb:Mmol_1787 glycosyl transferase group 1.
  
 
  0.824
Rvan_1313
TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; KEGG: bid:Bind_0435 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase.
 
 
 0.822
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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