STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0188PFAM: Protein of unknown function DUF2252; KEGG: msl:Msil_2675 hypothetical protein. (364 aa)    
Predicted Functional Partners:
Rvan_0187
PFAM: flavin reductase domain protein FMN-binding; KEGG: rpt:Rpal_2510 flavin reductase domain protein FMN-binding.
       0.780
Rvan_0320
PFAM: Methyltransferase type 12; KEGG: rlg:Rleg_1274 hypothetical protein.
  
     0.530
Rvan_0189
KEGG: nha:Nham_4237 hypothetical protein.
       0.529
Rvan_0767
KEGG: met:M446_6293 hypothetical protein.
  
     0.499
Rvan_3020
KEGG: oca:OCAR_6674 squalene synthase HpnC; TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase.
  
     0.446
Rvan_3018
KEGG: rpc:RPC_1719 amine oxidase; TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase.
  
     0.416
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.