STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0207KEGG: mex:Mext_2726 phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: amine oxidase. (522 aa)    
Predicted Functional Partners:
Rvan_0206
PFAM: hydroxyneurosporene synthase; KEGG: mrd:Mrad2831_2823 hydroxyneurosporene synthase.
 
 
 0.994
Rvan_0208
O-methyltransferase family 2; KEGG: rce:RC1_2092 hydroxyneurosporene methyltransferase; manually curated; PFAM: O-methyltransferase family 2.
 
 
 0.977
Rvan_0150
Phytoene synthase; KEGG: xau:Xaut_3578 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase.
  
 0.915
Rvan_3019
TIGRFAM: squalene synthase HpnD; KEGG: msl:Msil_3241 squalene synthase HpnD; PFAM: Squalene/phytoene synthase.
 
  
 0.883
Rvan_0149
KEGG: psa:PST_3874 lycopene cyclase; TIGRFAM: lycopene cyclase; lycopene cyclase family protein; PFAM: Lycopene beta and epsilon cyclase.
 
 0.865
Rvan_0535
Von Willebrand factor type A; KEGG: rce:RC1_2082 magnesium chelatase subunit D; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
 
  
 0.800
Rvan_0212
KEGG: rpc:RPC_1295 chlorophyllide reductase subunit Z; TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1.
 
  
 0.781
Rvan_0209
KEGG: msl:Msil_2051 chlorophyll synthesis pathway, BchC; TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein.
 
  
 0.769
Rvan_0211
KEGG: rce:RC1_2095 chlorophyllide reductase subunit Y; TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase component 1.
 
    0.766
Rvan_3020
KEGG: oca:OCAR_6674 squalene synthase HpnC; TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase.
 
  
 0.727
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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