Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Rvan_0217Photosynthetic reaction center, M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (325 aa)    
Predicted Functional Partners:
Rvan_0215
Antenna complex alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
 0.999
Rvan_0214
Antenna complex alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
 
 0.998
Rvan_0218
Photosynthetic reaction centre cytochrome c subunit; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.
 
 0.998
Rvan_0992
KEGG: bbt:BBta_6411 reaction center protein H chain (photosynthetic reaction center H subunit); TIGRFAM: photosynthetic reaction center H subunit; PFAM: Photosynthetic reaction centre H subunit; PRC-barrel domain protein.
  
 0.996
Rvan_0216
KEGG: mch:Mchl_2963 photosynthetic reaction center L subunit; TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein.
 
  
 
0.978
Rvan_0212
KEGG: rpc:RPC_1295 chlorophyllide reductase subunit Z; TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1.
 
  
 0.941
Rvan_0994
TIGRFAM: magnesium protoporphyrin O-methyltransferase; KEGG: rce:RC1_2111 Mg-protoporphyrin IX methyl transferase; PFAM: Magnesium-protoporphyrin IX methyltransferase domain protein.
  
    0.940
Rvan_0210
TIGRFAM: chlorophyllide reductase iron protein subunit X; KEGG: rpt:Rpal_1710 chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; Belongs to the NifH/BchL/ChlL family.
 
  
 0.936
Rvan_0991
KEGG: rru:Rru_A0616 photosynthetic complex assembly protein.
  
    0.900
bchN
Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
  
  
 0.893
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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