STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0231PFAM: Glutathione S-transferase domain; KEGG: mes:Meso_1555 glutathione S-transferase-like. (203 aa)    
Predicted Functional Partners:
Rvan_0232
KEGG: mdi:METDI2760 beta-lactamase-like.
       0.779
Rvan_1538
PFAM: Glutathione S-transferase domain; KEGG: oca:OCAR_7181 glutathione S-transferase; Belongs to the GST superfamily.
   
 0.632
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.608
Rvan_1540
PFAM: Glutathione S-transferase domain; KEGG: pol:Bpro_0387 glutathione S-transferase-like.
   
 0.538
Rvan_0230
KEGG: oca:OCAR_6542 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
       0.529
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.517
Rvan_0233
KEGG: avi:Avi_2055 transcriptional regulator AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type.
       0.512
Rvan_2901
PFAM: aminoglycoside phosphotransferase; KEGG: rce:RC1_0551 aminoglycoside phosphotransferase, putative.
  
    0.502
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
   
   0.458
proB
Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.
       0.444
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.