STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0241PFAM: protein of unknown function DUF1045; KEGG: rsq:Rsph17025_0908 hypothetical protein. (234 aa)    
Predicted Functional Partners:
Rvan_1518
KEGG: pmy:Pmen_2880 phosphonate metabolism protein PhnM; TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase.
 
     0.815
Rvan_1524
KEGG: bja:blr1221 phosphonate metabolism protein; TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG.
 
     0.795
Rvan_1522
PFAM: phosphonate metabolism; KEGG: rpd:RPD_3827 phosphonate metabolism.
 
     0.791
Rvan_1523
KEGG: mrd:Mrad2831_3856 phosphonate C-P lyase system protein PhnH; TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism.
 
     0.790
Rvan_1520
TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: azc:AZC_3397 phosphonate C-P lyase system protein PhnK; SMART: AAA ATPase.
 
     0.784
Rvan_1521
Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
     0.784
Rvan_1519
TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; KEGG: bra:BRADO5351 putative phosphonate ABC transporter, ATP-binding component, PhnL protein; SMART: AAA ATPase.
 
     0.783
Rvan_1525
TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: phosphonate metabolim protein, transferase hexapeptide repeat family.
 
     0.653
Rvan_2347
PFAM: metallophosphoesterase; KEGG: rpc:RPC_3810 metallophosphoesterase.
  
  
 0.619
Rvan_2911
Phosphodiesterase, MJ0936 family; KEGG: psa:PST_4015 phosphoesterase, putative; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase.
  
  
 0.619
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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