STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0255KEGG: bbt:BBta_7063 putative ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (262 aa)    
Predicted Functional Partners:
Rvan_2885
PFAM: protein of unknown function DUF214; KEGG: hna:Hneap_0780 protein of unknown function DUF214.
 
 0.990
Rvan_0256
PFAM: protein of unknown function DUF214; KEGG: bbt:BBta_7062 putative ABC transporter, permease protein.
 
 
 0.937
Rvan_0254
PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_7064 hypothetical protein.
 
 
 0.863
Rvan_3620
KEGG: sus:Acid_3848 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
    
0.805
pstB
Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
  
0.798
Rvan_0317
KEGG: acr:Acry_1898 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; peptidase C39 bacteriocin processing; SMART: AAA ATPase.
   
0.783
Rvan_0116
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.700
Rvan_0635
AAA ATPase central domain protein; KEGG: scl:sce5713 cell division cycle protein 48-related protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; Belongs to the AAA ATPase family.
  
     0.700
Rvan_3537
KEGG: bbt:BBta_4530 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214.
 
 
 0.644
Rvan_0578
PFAM: protein of unknown function DUF214; KEGG: rde:RD1_1737 peptide ABC transporter, permease component, putative.
 
 
 0.630
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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