Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0256PFAM: protein of unknown function DUF214; KEGG: bbt:BBta_7062 putative ABC transporter, permease protein. (371 aa)    
Predicted Functional Partners:
Rvan_0254
PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_7064 hypothetical protein.
 
   
 0.947
Rvan_0255
KEGG: bbt:BBta_7063 putative ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.939
Rvan_2226
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.741
Rvan_2886
KEGG: ret:RHE_CH02075 putative ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.720
Rvan_0577
KEGG: tmz:Tmz1t_3494 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.659
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.659
Rvan_0495
KEGG: avn:Avin_00480 ABC transporter, ATP binding component; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.644
Rvan_0502
KEGG: rpa:RPA1391 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.644
Rvan_1646
PFAM: GTP-binding protein HSR1-related; KEGG: tkm:TK90_0656 GTP-binding protein HSR1-related protein.
  
     0.558
Rvan_0151
KEGG: gau:GAU_0057 hypothetical protein.
  
     0.500
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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