STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0259PFAM: protein of unknown function DUF323; KEGG: azl:AZL_f01070 hypothetical protein. (281 aa)    
Predicted Functional Partners:
Rvan_1262
PFAM: peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: mno:Mnod_2951 peptidase C14 caspase catalytic subunit P20.
   
 0.924
Rvan_0260
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpb:RPB_2782 hypothetical protein.
       0.705
Rvan_3560
PFAM: sulfatase; KEGG: ava:Ava_0111 sulfatase.
 
   0.580
Rvan_1242
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: rsp:RSP_4069 caspase-1, P20.
     0.493
Rvan_2346
KEGG: rpt:Rpal_1867 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; UspA domain-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain.
 
  
 0.459
Rvan_2829
KEGG: app:CAP2UW1_2906 hypothetical protein.
  
   
 0.435
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.