Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rvan_0273 | Rvan_0274 | Rvan_0273 | Rvan_0274 | KEGG: rpb:RPB_0700 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; Belongs to the UPF0758 family. | PFAM: Conserved hypothetical protein CHP00730; KEGG: met:M446_0460 hypothetical protein; Belongs to the LOG family. | 0.433 |
Rvan_0274 | Rvan_0273 | Rvan_0274 | Rvan_0273 | PFAM: Conserved hypothetical protein CHP00730; KEGG: met:M446_0460 hypothetical protein; Belongs to the LOG family. | KEGG: rpb:RPB_0700 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; Belongs to the UPF0758 family. | 0.433 |
Rvan_0274 | Rvan_0275 | Rvan_0274 | Rvan_0275 | PFAM: Conserved hypothetical protein CHP00730; KEGG: met:M446_0460 hypothetical protein; Belongs to the LOG family. | KEGG: bra:BRADO4693 multidrug ABC transporter ATPase/permease; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. | 0.527 |
Rvan_0274 | prmC | Rvan_0274 | Rvan_2730 | PFAM: Conserved hypothetical protein CHP00730; KEGG: met:M446_0460 hypothetical protein; Belongs to the LOG family. | protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. | 0.411 |
Rvan_0275 | Rvan_0274 | Rvan_0275 | Rvan_0274 | KEGG: bra:BRADO4693 multidrug ABC transporter ATPase/permease; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. | PFAM: Conserved hypothetical protein CHP00730; KEGG: met:M446_0460 hypothetical protein; Belongs to the LOG family. | 0.527 |
prmC | Rvan_0274 | Rvan_2730 | Rvan_0274 | protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. | PFAM: Conserved hypothetical protein CHP00730; KEGG: met:M446_0460 hypothetical protein; Belongs to the LOG family. | 0.411 |