STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0286KEGG: bid:Bind_2475 NADH dehydrogenase. (321 aa)    
Predicted Functional Partners:
Rvan_0289
PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: xau:Xaut_0170 NADH-ubiquinone oxidoreductase chain 49kDa.
 
 
 0.999
Rvan_0290
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: bja:blr6344 hydrogenase-3 subunit G.
 
 0.999
Rvan_0285
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bja:blr6339 hydrogenase 4 subunit B.
 
 
 0.990
Rvan_0288
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpe:RPE_0955 hydrogenase 4 subunit F.
 
 
 0.990
Rvan_0287
KEGG: xau:Xaut_0168 putative hydrogenase-4 component E.
 
  
 0.977
Rvan_0592
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mag:amb3375 putative glutamate synthase (NADPH) small subunit.
  
 
 0.930
nuoI
NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.919
Rvan_1088
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: nhl:Nhal_1813 NADH/ubiquinone/plastoquinone (complex I).
 
 
 0.873
Rvan_1089
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sfr:Sfri_2742 NADH dehydrogenase (quinone).
  
 
 0.819
Rvan_1090
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sfr:Sfri_2741 NADH dehydrogenase (quinone).
  
 
 0.814
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.