STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0288PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpe:RPE_0955 hydrogenase 4 subunit F. (478 aa)    
Predicted Functional Partners:
Rvan_0289
PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: xau:Xaut_0170 NADH-ubiquinone oxidoreductase chain 49kDa.
 
 0.999
Rvan_0286
KEGG: bid:Bind_2475 NADH dehydrogenase.
 
 
 0.990
Rvan_0290
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: bja:blr6344 hydrogenase-3 subunit G.
 
 
 0.990
Rvan_0287
KEGG: xau:Xaut_0168 putative hydrogenase-4 component E.
 
  
 0.967
Rvan_0285
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bja:blr6339 hydrogenase 4 subunit B.
 
  
0.945
Rvan_3645
TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; KEGG: azc:AZC_1679 NADH-plastoquinone oxidoreductase chain 5 protein; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH dehydrogenase subunit 5 domain protein.
 
 
0.917
Rvan_1091
PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: sse:Ssed_1396 NADH-ubiquinone oxidoreductase, chain 4L.
  
 
 0.909
Rvan_1092
PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: tkm:TK90_1003 Na+/H+ antiporter MnhB subunit-related protein.
  
 
 0.901
Rvan_1096
PFAM: cation antiporter; KEGG: sse:Ssed_1390 cation antiporter.
  
 
 0.899
Rvan_1094
PFAM: multiple resistance and pH regulation protein F; KEGG: sfr:Sfri_2736 multiple resistance and pH regulation protein F.
  
 
 0.896
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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