STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0299Cobalt chelatase, pCobT subunit; SMART: von Willebrand factor type A; TIGRFAM: cobalt chelatase, pCobT subunit; KEGG: pla:Plav_1712 cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit. (621 aa)    
Predicted Functional Partners:
Rvan_0300
SMART: AAA ATPase; TIGRFAM: cobalt chelatase, pCobS small subunit; KEGG: msl:Msil_0318 cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities AAA_5.
 
 
 0.992
Rvan_1533
TIGRFAM: cobaltochelatase, CobN subunit; KEGG: rpc:RPC_1889 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase.
     
 0.912
Rvan_3506
TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: mpo:Mpop_1702 ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; Lipid A 3-O-deacylase-related; Belongs to the Cob(I)alamin adenosyltransferase family.
    
  0.901
Rvan_0588
KEGG: tgr:Tgr7_2197 cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase.
     
  0.900
cobB-2
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
     
  0.900
Rvan_0301
KEGG: mes:Meso_3068 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
 
     0.797
atpF
H+transporting two-sector ATPase B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.696
atpF-2
H+transporting two-sector ATPase B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.653
Rvan_2019
KEGG: helicase domain protein; PFAM: helicase domain protein; SMART: helicase domain protein.
  
     0.601
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.597
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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