STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0303PFAM: phospholipase/Carboxylesterase; KEGG: xau:Xaut_3842 phospholipase/carboxylesterase. (219 aa)    
Predicted Functional Partners:
Rvan_3466
TIGRFAM: small GTP-binding protein; PFAM: Ras family protein; KEGG: chl:Chy400_1355 small GTP-binding protein; SMART: Ras small GTPase, Rab type.
   
 0.703
Rvan_0302
PFAM: BolA family protein; KEGG: ptr:457263 bolA homolog 1 (E. coli); Belongs to the BolA/IbaG family.
       0.693
Rvan_0753
KEGG: met:M446_4878 HhH-GPD family protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein.
    
 0.681
Rvan_0526
PFAM: NAD-dependent epimerase/dehydratase; KEGG: NAD-dependent epimerase/dehydratase family protein.
 
 
    0.473
Rvan_0301
KEGG: mes:Meso_3068 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
  
    0.459
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.