Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0317KEGG: acr:Acry_1898 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; peptidase C39 bacteriocin processing; SMART: AAA ATPase. (757 aa)    
Predicted Functional Partners:
Rvan_0316
KEGG: acr:Acry_1897 HlyD family type I secretion membrane fusion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.
 
 0.996
Rvan_0315
KEGG: acr:Acry_1896 Sel1 domain-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein.
 
     0.937
pstB
Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
     
0.899
Rvan_1227
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: oan:Oant_1901 siderophore-interacting protein.
   
   0.815
Rvan_0255
KEGG: bbt:BBta_7063 putative ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
   
0.782
Rvan_0053
KEGG: msl:Msil_1453 type I secretion outer membrane protein, TolC family; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.
  
  
 0.764
Rvan_2458
KEGG: met:M446_3171 hypothetical protein.
  
  
 0.760
Rvan_1105
ABC transporter related protein; KEGG: azl:AZL_012450 ATP-binding cassette subfamily B; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
 
 
0.652
Rvan_0254
PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_7064 hypothetical protein.
  
 
 0.643
Rvan_1186
PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_2370 secretion protein HlyD.
  
 
 0.643
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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