STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0384KEGG: met:M446_5709 hypothetical protein. (389 aa)    
Predicted Functional Partners:
Rvan_0383
PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpe:RPE_4909 hypothetical protein.
       0.632
Rvan_2459
KEGG: cpc:Cpar_1823 hypothetical protein.
  
     0.590
Rvan_2678
PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_3645 major facilitator transporter.
  
     0.577
Rvan_2099
KEGG: oca:OCAR_7278 hypothetical protein.
  
     0.509
Rvan_0385
KEGG: cel:F46F11.1 hypothetical protein.
       0.505
Rvan_0120
KEGG: mpo:Mpop_2461 protein tyrosine phosphatase.
  
     0.476
Rvan_0277
PFAM: major facilitator superfamily MFS_1; KEGG: bra:BRADO5110 major facilitator superfamily permease.
  
     0.461
Rvan_2102
KEGG: mrd:Mrad2831_5652 hypothetical protein.
  
     0.461
Rvan_0754
PFAM: Conserved hypothetical protein CHP02001; KEGG: cak:Caul_3758 hypothetical protein.
  
     0.457
ndvA
Glucan exporter ATP-binding protein; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
     0.449
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.