Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0418PFAM: polysaccharide biosynthesis protein; KEGG: tel:tlr1345 hypothetical protein. (497 aa)    
Predicted Functional Partners:
Rvan_0414
KEGG: tel:tlr0243 hypothetical protein.
 
  
 0.941
Rvan_0420
Glutamine--scyllo-inositol transaminase; KEGG: tel:tlr1344 putative aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.940
Rvan_0422
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tel:tlr1344 putative aminotransferase.
 
  
 0.906
Rvan_0423
PFAM: WxcM-like domain-containing protein; transferase hexapeptide repeat containing protein; KEGG: rfr:Rfer_0690 WxcM-like.
 
  
 0.892
Rvan_0417
PFAM: glycosyl transferase family 2; KEGG: glycosyl transferase family 2.
 
  
 0.881
Rvan_0416
PFAM: glycosyl transferase family 2; KEGG: tel:tlr1346 hypothetical protein.
 
  
 0.879
Rvan_2278
TIGRFAM: nucleotide sugar dehydrogenase; KEGG: mmr:Mmar10_2489 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
  
  
 0.860
Rvan_3091
KEGG: swi:Swit_4019 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.860
Rvan_3089
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.858
Rvan_0398
PFAM: sugar transferase; KEGG: cpb:Cphamn1_0384 sugar transferase.
  
  
 0.848
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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