STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0422PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tel:tlr1344 putative aminotransferase. (46 aa)    
Predicted Functional Partners:
Rvan_0423
PFAM: WxcM-like domain-containing protein; transferase hexapeptide repeat containing protein; KEGG: rfr:Rfer_0690 WxcM-like.
 
  
 0.968
Rvan_0398
PFAM: sugar transferase; KEGG: cpb:Cphamn1_0384 sugar transferase.
  
  
 0.924
Rvan_0435
PFAM: sugar transferase; KEGG: cpb:Cphamn1_0384 sugar transferase.
  
  
 0.924
Rvan_0840
KEGG: pla:Plav_1925 sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.924
Rvan_2767
PFAM: sugar transferase; KEGG: gwc:GWCH70_3256 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.924
Rvan_0418
PFAM: polysaccharide biosynthesis protein; KEGG: tel:tlr1345 hypothetical protein.
 
  
 0.905
Rvan_0414
KEGG: tel:tlr0243 hypothetical protein.
 
  
 0.842
Rvan_0424
KEGG: sdl:Sdel_1782 hypothetical protein.
  
  
 0.816
Rvan_0416
PFAM: glycosyl transferase family 2; KEGG: tel:tlr1346 hypothetical protein.
 
  
 0.747
Rvan_3091
KEGG: swi:Swit_4019 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.722
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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