STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0423PFAM: WxcM-like domain-containing protein; transferase hexapeptide repeat containing protein; KEGG: rfr:Rfer_0690 WxcM-like. (251 aa)    
Predicted Functional Partners:
Rvan_0422
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tel:tlr1344 putative aminotransferase.
 
  
 0.968
Rvan_0420
Glutamine--scyllo-inositol transaminase; KEGG: tel:tlr1344 putative aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.936
Rvan_0418
PFAM: polysaccharide biosynthesis protein; KEGG: tel:tlr1345 hypothetical protein.
 
  
 0.891
Rvan_3092
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
    0.880
Rvan_0845
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
    0.838
Rvan_0416
PFAM: glycosyl transferase family 2; KEGG: tel:tlr1346 hypothetical protein.
 
  
 0.788
Rvan_0417
PFAM: glycosyl transferase family 2; KEGG: glycosyl transferase family 2.
 
   
 0.781
Rvan_0424
KEGG: sdl:Sdel_1782 hypothetical protein.
       0.779
Rvan_0414
KEGG: tel:tlr0243 hypothetical protein.
 
    0.656
Rvan_0425
PFAM: glycosyl transferase group 1; KEGG: family 2 glycosyl transferase.
 
    0.633
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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