STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0426PFAM: Methyltransferase type 11; KEGG: hch:HCH_04637 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benz oquinol methylase. (274 aa)    
Predicted Functional Partners:
Rvan_0425
PFAM: glycosyl transferase group 1; KEGG: family 2 glycosyl transferase.
       0.773
Rvan_2641
PFAM: Methyltransferase type 11; KEGG: rec:RHECIAT_PA0000348 probable methyltransferase protein.
  
     0.521
Rvan_0413
TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: tel:tll0236 asparagine synthetase; PFAM: asparagine synthase; glutamine amidotransferase class-II.
 
    0.493
Rvan_0422
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tel:tlr1344 putative aminotransferase.
  
    0.474
Rvan_0423
PFAM: WxcM-like domain-containing protein; transferase hexapeptide repeat containing protein; KEGG: rfr:Rfer_0690 WxcM-like.
       0.466
Rvan_0424
KEGG: sdl:Sdel_1782 hypothetical protein.
       0.464
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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