Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
Rvan_0461KEGG: app:CAP2UW1_3347 poly(hydroxyalkanoate) granule-associated protein; TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein. (158 aa)    
Predicted Functional Partners:
Rvan_0462
PFAM: Patatin; KEGG: aha:AHA_2273 patatin family phospholipase.
 
   
 0.948
Rvan_0463
PFAM: regulatory protein TetR; KEGG: app:CAP2UW1_3345 transcriptional regulator, TetR family.
 
     0.936
Rvan_0460
PFAM: Male sterility domain; short-chain dehydrogenase/reductase SDR; KEGG: app:CAP2UW1_3348 male sterility domain protein.
 
     0.864
Rvan_0486
KEGG: app:CAP2UW1_2233 hypothetical protein.
  
     0.771
Rvan_0464
KEGG: app:CAP2UW1_3344 hypothetical protein.
       0.765
Rvan_0485
Acyltransferase, WS/DGAT/MGAT; KEGG: asa:ASA_2036 hypothetical protein; TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089.
  
     0.749
nadK
ATP-NAD/AcoX kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
 
     0.477
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
       0.440
Rvan_0466
PFAM: glycosyl transferase group 1; KEGG: hne:HNE_0029 glycosyl transferase, group 1 family protein.
       0.409
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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