STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0463PFAM: regulatory protein TetR; KEGG: app:CAP2UW1_3345 transcriptional regulator, TetR family. (232 aa)    
Predicted Functional Partners:
Rvan_0461
KEGG: app:CAP2UW1_3347 poly(hydroxyalkanoate) granule-associated protein; TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein.
 
     0.936
Rvan_0462
PFAM: Patatin; KEGG: aha:AHA_2273 patatin family phospholipase.
 
     0.917
Rvan_0464
KEGG: app:CAP2UW1_3344 hypothetical protein.
   
   0.782
Rvan_0460
PFAM: Male sterility domain; short-chain dehydrogenase/reductase SDR; KEGG: app:CAP2UW1_3348 male sterility domain protein.
 
   
 0.780
Rvan_0486
KEGG: app:CAP2UW1_2233 hypothetical protein.
  
     0.673
Rvan_1686
TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; GAF domain protein; response regulator receiver; KEGG: bra:BRADO6873 two-component sensor histidine kinase; SMART: GAF domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver.
    
 
 0.472
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.470
Rvan_1551
PFAM: Aldehyde Dehydrogenase; KEGG: mlo:mlr4051 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.462
Rvan_0485
Acyltransferase, WS/DGAT/MGAT; KEGG: asa:ASA_2036 hypothetical protein; TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089.
  
   
 0.457
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
       0.453
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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