STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0469KEGG: protein-tyrosine-phosphatase; PFAM: PHP domain protein. (279 aa)    
Predicted Functional Partners:
Rvan_0389
TIGRFAM: capsular exopolysaccharide family; KEGG: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
 0.920
Rvan_2763
TIGRFAM: capsular exopolysaccharide family; KEGG: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
 0.920
Rvan_3538
KEGG: mpo:Mpop_4997 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
     
 0.905
Rvan_0470
PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: polysaccharide export protein.
 
     0.900
Rvan_2767
PFAM: sugar transferase; KEGG: gwc:GWCH70_3256 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.785
Rvan_2766
PFAM: O-antigen polymerase; KEGG: hypothetical protein.
 
    0.781
Rvan_0394
PFAM: O-antigen polymerase; KEGG: hypothetical protein.
 
    0.776
Rvan_0398
PFAM: sugar transferase; KEGG: cpb:Cphamn1_0384 sugar transferase.
 
  
 0.767
Rvan_0435
PFAM: sugar transferase; KEGG: cpb:Cphamn1_0384 sugar transferase.
 
  
 0.767
Rvan_0840
KEGG: pla:Plav_1925 sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.701
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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